The following figure shows the output plots: Epidemic Curve, Estimated R, and Explored Serial Interval Distribution
FALSE Mean(R) Std(R)
FALSE 1: 0.9056552 0.06205447
FALSE Quantile.0.025(R) Quantile.0.05(R) Quantile.0.25(R) Median(R)
FALSE 1: 0.7881065 0.8060584 0.8630636 0.9042383
FALSE Quantile.0.75(R) Quantile.0.95(R)
FALSE 1: 0.9467023 1.010085
R Core Team (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URLhttps://www.R-project.org/
packages used: dplyr, data.table, lubridate, reshape2, ggplot2, EpiEstim, epicontacts, googlesheets4, readxl
Help us improve our viz. Send a pull request at link
H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016
Matt Dowle and Arun Srinivasan (2019). data.table: Extension of data.frame. R package version 1.12.8. https://CRAN.R-project.org/package=data.table
Hadley Wickham, Romain Fran